PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21801_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 93aa    MW: 10571.8 Da    PI: 8.5328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21801_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-0820611454
                 HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
          HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                 d+iN+   +L++llP++  + +s K+s a +L+ +++YI++L
  RrC21801_p1 20 DQINDLVIKLQQLLPELRdSHRSDKVSAARVLQDTCNYIRNL 61
                 79**************555*********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.198661IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-62061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-82083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-102079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0010086Biological Processembryonic root morphogenesis
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSGRRSRPRQ SSGTTRISED QINDLVIKLQ QLLPELRDSH RSDKVSAARV LQDTCNYIRN  60
LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273951e-111AK227395.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-05-N07.
GenBankAY0882861e-111AY088286.1 Arabidopsis thaliana clone 519 mRNA, complete sequence.
GenBankBT0030461e-111BT003046.1 Arabidopsis thaliana At1g74500 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619875.15e-59PREDICTED: transcription factor PRE3
RefseqXP_013726481.15e-59PREDICTED: transcription factor PRE3
SwissprotQ9CA648e-48PRE3_ARATH; Transcription factor PRE3
TrEMBLA0A0D3AQI06e-59A0A0D3AQI0_BRAOL; Uncharacterized protein
STRINGBra003797.1-P5e-52(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.17e-49activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1